# Biom Documentation

## Docs

- [AI Agent Capabilities](https://docs.biom.science/ai-agent/capabilities.md): Everything the AI agent can do — from data analysis to code execution.
- [AI Agent](https://docs.biom.science/ai-agent/overview.md): Natural language interface for scientific data analysis.
- [Pricing](https://docs.biom.science/compute/pricing.md): Compute costs for running models on cloud GPUs.
- [Compute Providers](https://docs.biom.science/compute/providers.md): Where and how your models run — cloud GPU, local Docker, HPC, and more.
- [Scientific Databases](https://docs.biom.science/databases/overview.md): Browse and mount datasets from DANDI, IDR, Allen Brain Atlas, and AWS Open Data.
- [Decks](https://docs.biom.science/decks/overview.md): Capture viewport snapshots into presentation-ready card collections.
- [Biom Drive](https://docs.biom.science/drive/biom-drive.md): Cloud storage with managed S3, Google Drive, and BYOB support.
- [File Conversion](https://docs.biom.science/files/file-conversion.md): Client-side image decoding and optional format conversion.
- [Supported File Formats](https://docs.biom.science/files/supported-formats.md): All file formats Biom can open, view, and process.
- [Quickstart](https://docs.biom.science/getting-started/quickstart.md): Get started with Biom in under 5 minutes.
- [Biom](https://docs.biom.science/index.md): A browser-based research workspace for scientific data.
- [Cellpose — Cell Segmentation](https://docs.biom.science/models/cellpose.md): GPU-accelerated cell and nuclei segmentation.
- [DeepLabCut — Pose Estimation](https://docs.biom.science/models/deeplabcut.md): Markerless animal pose estimation and tracking.
- [Models Overview](https://docs.biom.science/models/overview.md): Scientific AI models available in Biom.
- [PlantCV — Plant Phenotyping](https://docs.biom.science/models/plantcv.md): Automated plant morphology, shape, and color analysis.
- [SAM3 — Segment Anything](https://docs.biom.science/models/sam.md): Universal segmentation for images and videos.
- [SExtractor — Source Extraction](https://docs.biom.science/models/sextractor.md): Detect and measure astronomical sources in images.
- [SpikeInterface — Spike Sorting](https://docs.biom.science/models/spikeinterface.md): Automated spike sorting with 7 sorter backends.
- [Suite2p — Calcium Imaging](https://docs.biom.science/models/suite2p.md): ROI detection, motion correction, and spike deconvolution for two-photon imaging.
- [Building Pipelines](https://docs.biom.science/pipelines/building-pipelines.md): Create and run multi-step analysis pipelines.
- [Pipelines Overview](https://docs.biom.science/pipelines/overview.md): Chain multiple analysis steps into automated workflows.
- [Settings](https://docs.biom.science/settings/overview.md): Configure your Biom workspace, storage, compute, and integrations.
- [Sharing & Collaboration](https://docs.biom.science/sharing/overview.md): Share files, folders, workspaces, and external links with role-based permissions.
- [Annotations](https://docs.biom.science/viewer/annotations.md): Draw, label, and annotate your data.
- [Viewer Controls](https://docs.biom.science/viewer/controls.md): Image adjustments, channel controls, navigation, and toolbar tools.
- [Pane System](https://docs.biom.science/viewer/pane-system.md): Split your workspace into multiple independent viewers.

## OpenAPI Specs

- [openapi](https://docs.biom.science/api-reference/openapi.json)

## Optional

- [App](https://biom.science)
- [GitHub](https://github.com/moeltae/biom)